C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000221283 STXBP2-001 ENSG00000076944 9606 + 19:7637119-7647873 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverLungOvaryPlacentaTestisENST00000221283
Transcript ID Kidney Liver Lung Ovary Placenta Testis
ENST00000221283 18.367±0.00 7.021±0.00 3.589±0.00 14.195±6.50 44.021±10.87 38.226±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00010X CIL_00010X_0001 CGP 19:7631611-7647873
CIL_00035H CIL_00035H_0001 CGP 19:7636881-7670454

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001909 IMP leukocyte mediated cytotoxicity
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0005886 IDA plasma membrane
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0015031 IEA protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030348 IPI syntaxin-3 binding
GO:0031201 IDA SNARE complex
GO:0042581 IDA specific granule
GO:0042582 IDA azurophil granule
GO:0043304 ISS regulation of mast cell degranulation
GO:0043312 IEP neutrophil degranulation
GO:0044194 IDA cytolytic granule
GO:0070062 IDA extracellular vesicular exosome
GO:0070820 IDA tertiary granule

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160708 Stxbp2-001 protein_coding Mus_musculus 0 2126
ENSMUST00000004745 Stxbp2-002 protein_coding Mus_musculus 0 2098
ENSMUST00000159888 Stxbp2-005 processed_transcript Mus_musculus 0 769
ENSMUST00000162737 Stxbp2-006 retained_intron Mus_musculus 0 678
ENSMUST00000162867 Stxbp2-003 processed_transcript Mus_musculus 0 516
ENSMUST00000163044 Stxbp2-007 retained_intron Mus_musculus 0 287
ENSMUST00000162974 Stxbp2-010 retained_intron Mus_musculus 0 261
ENSMUST00000160435 Stxbp2-011 processed_transcript Mus_musculus 0 254
ENSMUST00000161982 Stxbp2-008 retained_intron Mus_musculus 0 243

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