C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sideroflexin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000224807 SFXN3-201 ENSG00000107819 9606 + 10:101031239-101041240 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000224807
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000224807 16.858±0.00 3.023±0.00 2.698±0.00 11.529±0.00 8.389±3.19 5.373±4.11 0.798±0.00 4.179±3.27 2.616±0.00 10.986±0.00 0.457±0.00 7.075±4.61 19.228±3.21 6.256±4.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BD CIL_0008BD_0001 VISTA 10:100486833-101088338
CIL_0007U1 CIL_0007U1_0001 VISTA 10:100491715-101092615
CIL_000940 CIL_000940_0001 VISTA 10:100919065-101519843
CIL_0005NG CIL_0005NG_0001 CGP 10:101007683-101041244
CIL_0005NF CIL_0005NF_0001 CGP 10:101031234-101068131

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0006811 IEA ion transport
GO:0008324 IEA cation transmembrane transporter activity
GO:0015075 IEA ion transmembrane transporter activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0055072 IEA iron ion homeostasis
GO:0055085 IEA transmembrane transport
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000062213 Sfxn3-201 protein_coding Mus_musculus 0 1349
ENSMUST00000084493 Sfxn3-202 protein_coding Mus_musculus 0 891
ENSMUST00000111954 Sfxn3-203 protein_coding Mus_musculus 0 802
ENSDART00000023654 sfxn1-201 protein_coding Danio_rerio 0 243
ENSDART00000133811 sfxn1-001 protein_coding Danio_rerio 0 243

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