C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sideroflexin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000062213 Sfxn3-201 ENSMUSG00000025212 10090 + 19:45047576-45056383 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062213
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062213 19.334±7.49 19.801±6.58 21.356±0.48 24.056±13.21 18.344±6.24 15.027±0.98 5.231±0.84 9.117±0.98 1.247±0.85 34.519±2.52 7.565±0.89 30.653±10.05 2.600±1.89 6.077±4.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BD CIL_0008BD_0002 VISTA 19:44496521-45098014
CIL_0007U1 CIL_0007U1_0002 VISTA 19:44501251-45102539
CIL_000940 CIL_000940_0002 VISTA 19:44925545-45526320
CIL_0005NG CIL_0005NG_0002 CGP 19:45026906-45056383
CIL_0007ZR CIL_0007ZR_0002 VISTA 19:45042853-45643685
CIL_0005NF CIL_0005NF_0002 CGP 19:45047576-45079289

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 ISA mitochondrion
GO:0008150 ND biological_process
GO:0008324 IEA cation transmembrane transporter activity
GO:0016021 IEA integral component of membrane
GO:0055072 IEA iron ion homeostasis
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000224807 SFXN3-201 protein_coding Homo_sapiens 0 1349
ENST00000393459 SFXN3-001 protein_coding Homo_sapiens 0 1349
ENST00000465383 SFXN3-004 processed_transcript Homo_sapiens 0 483
ENST00000466982 SFXN3-003 processed_transcript Homo_sapiens 0.00000002 66
ENST00000487721 SFXN3-006 processed_transcript Homo_sapiens 0 348
ENST00000489434 SFXN3-005 nonsense_mediated_decay Homo_sapiens 0 604

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