C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sideroflexin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000107819 SFXN3 9606 + 10:101031234-101041244 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000224807 SFXN3-201 101031239-101041240 protein_coding
  ENST00000393459 SFXN3-001 101031234-101041244 protein_coding
  ENST00000465383 SFXN3-004 101036062-101037600 processed_transcript
  ENST00000466982 SFXN3-003 101037392-101040629 processed_transcript
  ENST00000470252 SFXN3-002 101037952-101041240 processed_transcript
  ENST00000487721 SFXN3-006 101036728-101038009 processed_transcript
  ENST00000489434 SFXN3-005 101034692-101037167 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000224807ENST00000393459ENST00000465383ENST00000466982ENST00000470252ENST00000487721
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000224807 16.858±0.00 3.023±0.00 2.698±0.00 11.529±0.00 8.389±3.19 5.373±4.11 0.798±0.00 4.179±3.27 2.616±0.00 10.986±0.00 0.457±0.00 7.075±4.61 19.228±3.21 6.256±4.31
ENST00000393459 N/A 3.072±0.00 N/A 9.516±0.00 N/A N/A 3.992±0.00 N/A 1.003±0.00 3.314±0.49 1.522±0.00 8.054±3.20 N/A 1.908±0.00
ENST00000465383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.696±0.00 N/A N/A N/A
ENST00000466982 N/A 2.082±0.00 N/A 2.517±0.00 0.960±0.00 0.552±0.00 0.857±0.00 N/A N/A 2.330±0.00 N/A 1.743±1.04 N/A 2.274±0.00
ENST00000470252 N/A 2.977±0.00 1.227±0.00 2.723±0.00 N/A N/A 0.289±0.00 1.963±0.00 0.535±0.40 N/A N/A 4.282±3.75 N/A N/A
ENST00000487721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.668±0.00 N/A 8.347±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BD CIL_0008BD_0001 VISTA 10:100486833-101088338
CIL_0007U1 CIL_0007U1_0001 VISTA 10:100491715-101092615
CIL_000940 CIL_000940_0001 VISTA 10:100919065-101519843
CIL_0005NG CIL_0005NG_0001 CGP 10:101007683-101041244
CIL_0005NF CIL_0005NF_0001 CGP 10:101031234-101068131

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0006811 IEA ion transport
GO:0008324 IEA cation transmembrane transporter activity
GO:0015075 IEA ion transmembrane transporter activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0055072 IEA iron ion homeostasis
GO:0055085 IEA transmembrane transport
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057374 sfxn3 sideroflexin 3 protein_coding Danio_rerio
ENSMUSG00000025212 Sfxn3 sideroflexin 3 protein_coding Mus_musculus

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