C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: G protein-coupled receptor kinase interacting ArfGAP 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000225394 GIT1-001 ENSG00000108262 9606 - 17:29573469-29589627 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000225394
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000225394 30.115±0.00 9.201±0.00 16.109±0.00 12.154±0.00 6.335±5.80 10.760±0.00 7.611±0.00 0.948±0.59 19.562±18.77 13.983±0.00 9.119±8.50 14.044±7.93 61.992±5.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BZ CIL_0009BZ_0001 VISTA 17:29367684-29969856
CIL_000873 CIL_000873_0001 VISTA 17:29367702-29969870
CIL_0004GJ CIL_0004GJ_0002 CGP 17:29573469-29614761

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005925 IDA focal adhesion
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0008277 TAS regulation of G-protein coupled receptor protein signaling pathway
GO:0016020 IDA membrane
GO:0016235 IDA aggresome
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100812 Git1-004 protein_coding Mus_musculus 0 3725
ENSMUST00000037285 Git1-001 protein_coding Mus_musculus 0 3650
ENSMUST00000152428 Git1-005 retained_intron Mus_musculus 0 839
ENSMUST00000127302 Git1-002 retained_intron Mus_musculus 0 645
ENSMUST00000139410 Git1-003 retained_intron Mus_musculus 0 566
ENSMUST00000128796 Git1-006 retained_intron Mus_musculus 0 257
ENSDART00000057696 git1-001 protein_coding Danio_rerio 0 200

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