C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sedoheptulokinase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000225519 SHPK-001 ENSG00000197417 9606 - 17:3608262-3636322 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000225519
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000225519 2.512±0.00 2.081±0.00 1.456±0.00 1.404±0.72 1.499±0.79 1.364±0.00 0.589±0.36 4.681±2.94 4.852±3.55 1.011±0.10 2.290±0.99 4.965±0.27 1.123±0.41

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005737 ISS cytoplasm
GO:0005975 IDA:IEA carbohydrate metabolic process
GO:0009052 ISS pentose-phosphate shunt, non-oxidative branch
GO:0016310 IDA phosphorylation
GO:0016773 IEA phosphotransferase activity, alcohol group as acceptor
GO:0035963 ISS cellular response to interleukin-13
GO:0043030 ISS regulation of macrophage activation
GO:0050277 IDA sedoheptulokinase activity
GO:0050727 ISS regulation of inflammatory response
GO:0071222 IDA cellular response to lipopolysaccharide
GO:0071353 ISS cellular response to interleukin-4

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006105 Shpk-002 protein_coding Mus_musculus 0 1522
ENSMUST00000131927 Shpk-001 nonsense_mediated_decay Mus_musculus 0 1168
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000001 60
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00002 57

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