C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 59
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000225972 LRRC59-001 ENSG00000108829 9606 - 17:50381238-50397553 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000225972
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000225972 31.934±0.00 28.834±0.00 1.946±0.00 11.457±5.61 15.390±6.93 17.194±4.99 5.468±4.77 22.010±17.86 28.020±21.99 17.357±13.03 8.051±6.72 39.059±12.94 46.073±10.82 23.742±6.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088W CIL_00088W_0001 VISTA 17:49956976-50560219

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0042645 IDA mitochondrial nucleoid
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021239 Lrrc59-001 protein_coding Mus_musculus 0 1668
ENSMUST00000138782 Lrrc59-002 retained_intron Mus_musculus 0 623

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