C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Y box binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000228251 YBX3-001 ENSG00000060138 9606 - 12:10699213-10723312 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000228251
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000228251 105.390±0.00 43.414±0.00 11.609±0.00 66.921±0.00 161.735±0.00 61.495±58.27 49.098±0.00 4.198±1.50 168.891±0.00 785.777±724.78 50.619±2.03 45.439±13.84 180.078±10.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000K7 CIL_0000K7_0001 CGP 12:10618939-10723312

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001227 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001701 IEA in utero embryonic development
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003690 TAS double-stranded DNA binding
GO:0003697 IEA single-stranded DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0003714 TAS transcription corepressor activity
GO:0003730 ISS mRNA 3'-UTR binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0005844 IEA polysome
GO:0005923 ISS tight junction
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007283 IEA spermatogenesis
GO:0008584 IEA male gonad development
GO:0009409 TAS response to cold
GO:0009566 IEA fertilization
GO:0017048 ISS Rho GTPase binding
GO:0030529 IEA ribonucleoprotein complex
GO:0043066 IEA negative regulation of apoptotic process
GO:0044822 IDA poly(A) RNA binding
GO:0046622 IEA positive regulation of organ growth
GO:0048471 ISS perinuclear region of cytoplasm
GO:0048642 IEA negative regulation of skeletal muscle tissue development
GO:0060546 IMP negative regulation of necroptotic process
GO:0070935 IC 3'-UTR-mediated mRNA stabilization
GO:0071356 IMP cellular response to tumor necrosis factor
GO:0071474 IMP cellular hyperosmotic response
GO:1902219 IMP negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress
GO:2000767 ISS positive regulation of cytoplasmic translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032309 Ybx3-201 protein_coding Mus_musculus 0 1814
ENSMUST00000087865 Ybx3-202 protein_coding Mus_musculus 0 795

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