C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB35, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138885 Rab35-002 ENSMUSG00000029518 10090 + 5:115632141-115646119 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartLiverMuscleOvaryPlacentaTestisENSMUST00000138885
Transcript ID Bladder Brain Colon Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000138885 9.578±0.61 34.485±17.86 10.996±0.00 8.041±0.00 11.716±4.47 3.730±0.00 21.567±14.51 24.303±11.86 8.772±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0002 VISTA 5:115188390-115791906
CIL_0004YR CIL_0004YR_0002 CGP 5:115565254-115647736

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005739 IDA mitochondrion
GO:0007264 IEA small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229340 RAB35-001 protein_coding Homo_sapiens 0 1240
ENST00000534951 RAB35-003 protein_coding Homo_sapiens 0 542
ENST00000538903 RAB35-005 protein_coding Homo_sapiens 0 483
ENST00000540803 RAB35-007 retained_intron Homo_sapiens 0 542
ENST00000543364 RAB35-006 processed_transcript Homo_sapiens 0 523
ENST00000544304 RAB35-002 nonsense_mediated_decay Homo_sapiens 0 1133

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