C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 30A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000230461 TMEM30A-002 ENSG00000112697 9606 - 6:75252924-75284968 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000230461
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000230461 31.468±0.00 30.275±0.00 8.192±0.00 34.782±18.67 15.678±8.10 19.810±10.96 8.314±4.85 21.966±10.47 12.073±2.26 27.170±11.98 5.841±3.28 13.809±3.12 12.130±1.87 18.007±7.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000623 CIL_000623_0002 CGP 6:75237675-75284968
CIL_000622 CIL_000622_0002 CGP 6:75252924-75493738

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006855 IDA drug transmembrane transport
GO:0010976 IEA positive regulation of neuron projection development
GO:0016020 IEA:IDA membrane
GO:0016021 IEA integral component of membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0036010 IMP protein localization to endosome
GO:0045332 IDA phospholipid translocation
GO:0070863 IDA positive regulation of protein exit from endoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034878 Tmem30a-001 protein_coding Mus_musculus 0 1797
ENSMUST00000120690 Tmem30a-002 protein_coding Mus_musculus 0 1345
ENSMUST00000153815 Tmem30a-003 retained_intron Mus_musculus 0 1035
ENSMUST00000130419 Tmem30a-004 retained_intron Mus_musculus 0 614

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