C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain containing 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000230901 BRD8-002 ENSG00000112983 9606 - 5:138156882-138178630 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaENST00000230901
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENST00000230901 3.954±0.00 3.678±0.00 1.298±0.00 4.991±0.71 2.991±1.97 2.221±0.17 2.152±1.08 3.517±1.69 1.226±0.00 3.001±2.48 4.429±0.40 6.212±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005P9 CIL_0005P9_0001 CGP 5:138139766-138187715

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000812 IDA Swr1 complex
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0004887 TAS thyroid hormone receptor activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005739 IDA mitochondrion
GO:0006325 TAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0007165 TAS signal transduction
GO:0007166 TAS cell surface receptor signaling pathway
GO:0030522 TAS intracellular receptor signaling pathway
GO:0035267 IDA NuA4 histone acetyltransferase complex
GO:0040008 IEA regulation of growth
GO:0043967 IDA histone H4 acetylation
GO:0043968 IDA histone H2A acetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003876 Brd8-001 protein_coding Mus_musculus 0 3949
ENSMUST00000115765 Brd8-008 protein_coding Mus_musculus 0 3832
ENSMUST00000097626 Brd8-003 protein_coding Mus_musculus 0 2686
ENSMUST00000115766 Brd8-002 protein_coding Mus_musculus 0 2211
ENSMUST00000152612 Brd8-004 retained_intron Mus_musculus 0 1402
ENSMUST00000153569 Brd8-005 retained_intron Mus_musculus 0 691
ENSMUST00000145431 Brd8-006 processed_transcript Mus_musculus 0 675

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