C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain containing 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003876 Brd8-001 ENSMUSG00000003778 10090 - 18:34598615-34624601 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartLiverMuscleENSMUST00000003876
Transcript ID Bladder Brain Colon Heart Liver Muscle
ENSMUST00000003876 1.232±0.00 4.189±0.00 1.455±0.18 0.593±0.06 0.386±0.00 0.718±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005P9 CIL_0005P9_0002 CGP 18:34598615-34633265

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000812 ISS Swr1 complex
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005739 IEA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0035267 ISS NuA4 histone acetyltransferase complex
GO:0040008 IEA regulation of growth
GO:0043967 ISS histone H4 acetylation
GO:0043968 ISS histone H2A acetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230901 BRD8-002 protein_coding Homo_sapiens 0 3949
ENST00000254900 BRD8-001 protein_coding Homo_sapiens 0 2571
ENST00000402931 BRD8-006 protein_coding Homo_sapiens 0 2686
ENST00000411594 BRD8-201 protein_coding Homo_sapiens 0 2019
ENST00000418329 BRD8-004 protein_coding Homo_sapiens 0 2019
ENST00000425764 BRD8-012 processed_transcript Homo_sapiens 0 689
ENST00000428808 BRD8-010 nonsense_mediated_decay Homo_sapiens 0 850
ENST00000430331 BRD8-007 protein_coding Homo_sapiens 2.8026e-45 185
ENST00000432618 BRD8-011 nonsense_mediated_decay Homo_sapiens 0 732
ENST00000441656 BRD8-005 protein_coding Homo_sapiens 0 2019
ENST00000450756 BRD8-008 nonsense_mediated_decay Homo_sapiens 0 494
ENST00000453824 BRD8-013 protein_coding Homo_sapiens 0 398
ENST00000454473 BRD8-003 protein_coding Homo_sapiens 0 2161
ENST00000460746 BRD8-016 retained_intron Homo_sapiens 0 484
ENST00000463620 BRD8-014 retained_intron Homo_sapiens 0 765
ENST00000471892 BRD8-020 retained_intron Homo_sapiens 0 342
ENST00000472478 BRD8-018 nonsense_mediated_decay Homo_sapiens 8e-38 161
ENST00000483805 BRD8-015 retained_intron Homo_sapiens 0 562
ENST00000489351 BRD8-017 retained_intron Homo_sapiens 0 508
ENST00000506167 BRD8-027 nonsense_mediated_decay Homo_sapiens 0 1050
ENST00000511898 BRD8-026 protein_coding Homo_sapiens 0 641
ENST00000512140 BRD8-022 nonsense_mediated_decay Homo_sapiens 0 2686
ENST00000515014 BRD8-028 processed_transcript Homo_sapiens 0 492
ENST00000515254 BRD8-025 retained_intron Homo_sapiens 0 606

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