C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: cadherin 9, type 2 (T1-cadherin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000231021 CDH9-001 ENSG00000113100 9606 - 5:26880600-27038586 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENST00000231021
Transcript ID Brain Testis
ENST00000231021 1.786±0.90 0.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MJ CIL_0006MJ_0002 CGP 5:24487100-27121150
CIL_0006MJ CIL_0006MJ_0003 CGP 5:26880600-31329146

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016337 NAS single organismal cell-cell adhesion
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0045216 TAS cell-cell junction organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026432 Cdh9-001 protein_coding Mus_musculus 0 3053

Loading