C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026432 Cdh9-001 ENSMUSG00000025370 10090 + 15:16778101-16857094 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000026432
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000026432 0.083±0.05 0.164±0.05 0.067±0.00 2.266±1.88 0.150±0.07 0.020±0.01 0.022±0.01 0.010±0.00 0.024±0.01 0.114±0.04 0.005±0.00 0.106±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MJ CIL_0006MJ_0005 CGP 15:13034200-16857094
CIL_0006MJ CIL_0006MJ_0004 CGP 15:16778101-19014236

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000231021 CDH9-001 protein_coding Homo_sapiens 0 3053
ENST00000323011 CDH7-002 protein_coding Homo_sapiens 0 191
ENST00000397968 CDH7-001 protein_coding Homo_sapiens 1.4013e-45 191
ENST00000505020 CDH9-004 retained_intron Homo_sapiens 0 1522
ENST00000505045 CDH9-003 retained_intron Homo_sapiens 0 1122
ENST00000511822 CDH9-002 protein_coding Homo_sapiens 1e-39 167
ENST00000513289 CDH9-005 protein_coding Homo_sapiens 0 399
ENST00000536984 CDH7-003 protein_coding Homo_sapiens 0 191

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