C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 9, type 2 (T1-cadherin)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113100 CDH9 9606 - 5:26880600-27121150 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000231021 CDH9-001 26880600-27038586 protein_coding
  ENST00000505020 CDH9-004 26880686-26890833 retained_intron
  ENST00000505045 CDH9-003 26903008-27038586 retained_intron
  ENST00000511822 CDH9-002 26915908-27038583 protein_coding
  ENST00000513289 CDH9-005 26915755-27121150 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastKidneyLiverLungTestisENST00000231021ENST00000505020ENST00000505045ENST00000511822ENST00000513289
Transcript ID Adipose Adrenal Bladder Brain Breast Kidney Liver Lung Testis
ENST00000231021 N/A N/A N/A 1.786±0.90 N/A N/A N/A N/A 0.028±0.00
ENST00000505020 N/A N/A 0.351±0.00 0.493±0.00 N/A 0.424±0.00 N/A 0.101±0.00 0.023±0.02
ENST00000505045 N/A N/A N/A 1.647±0.00 N/A N/A 0.124±0.00 N/A N/A
ENST00000511822 0.024±0.00 0.024±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000513289 N/A N/A 3.686±0.00 4.771±0.00 0.084±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MJ CIL_0006MJ_0002 CGP 5:24487100-27121150
CIL_0006MJ CIL_0006MJ_0003 CGP 5:26880600-31329146

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016337 NAS single organismal cell-cell adhesion
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0045216 TAS cell-cell junction organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014522 cdh6 cadherin 6 protein_coding Danio_rerio
ENSDARG00000055843 cdh10 cadherin 10, type 2 (T2-cadherin) protein_coding Danio_rerio
ENSDARG00000091395 CABZ01067945.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000025370 Cdh9 cadherin 9 protein_coding Mus_musculus

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