C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: B-cell CLL/lymphoma 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000232014 BCL6-004 ENSG00000113916 9606 - 3:187722398-187736569 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLungMuscleOvaryPlacentaENST00000232014
Transcript ID Breast Lung Muscle Ovary Placenta
ENST00000232014 1.984±0.00 2.000±0.00 4.071±0.00 1.578±0.00 0.954±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00003X CIL_00003X_0001 CGP 3:187698259-187745727
CIL_0003Y6 CIL_0003Y6_0002 CGP 3:187721377-188890671

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000060 IGI protein import into nucleus, translocation
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0002634 NAS regulation of germinal center formation
GO:0002903 NAS negative regulation of B cell apoptotic process
GO:0003682 IDA chromatin binding
GO:0003700 IMP sequence-specific DNA binding transcription factor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005657 IDA replication fork
GO:0006351 IEA transcription, DNA-templated
GO:0006954 IEA inflammatory response
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0030308 IDA negative regulation of cell growth
GO:0043065 IDA positive regulation of apoptotic process
GO:0043565 IDA sequence-specific DNA binding
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0050776 NAS regulation of immune response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023151 Bcl6-001 protein_coding Mus_musculus 0 2739
ENSMUST00000135352 Bcl6-002 retained_intron Mus_musculus 0 377

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