C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: wingless-type MMTV integration site family, member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000233948 WNT6-001 ENSG00000115596 9606 + 2:218859821-218874233 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000233948
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000233948 4.061±0.00 0.362±0.00 0.068±0.02 0.704±0.00 5.694±0.00 1.218±0.00 0.076±0.00 0.250±0.00 0.182±0.00 1.263±1.30 10.271±2.51 1.112±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006OQ CIL_0006OQ_0001 CGP 2:218822383-218874233
CIL_00041B CIL_00041B_0002 CGP 2:218859821-218899581

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001658 IEA branching involved in ureteric bud morphogenesis
GO:0005102 IEA receptor binding
GO:0005109 IBA frizzled binding
GO:0005576 TAS:IEA extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IBA extracellular space
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005796 TAS Golgi lumen
GO:0005886 TAS plasma membrane
GO:0007275 IEA multicellular organismal development
GO:0009798 IEA axis specification
GO:0009986 IEA cell surface
GO:0010628 IMP positive regulation of gene expression
GO:0016055 IBA:IEA Wnt signaling pathway
GO:0030182 ISS neuron differentiation
GO:0031012 IEA extracellular matrix
GO:0042475 IMP odontogenesis of dentin-containing tooth
GO:0045165 IBA cell fate commitment
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0060684 IEA epithelial-mesenchymal cell signaling
GO:0061303 ISS cornea development in camera-type eye
GO:0070172 IMP positive regulation of tooth mineralization
GO:0071300 ISS cellular response to retinoic acid
GO:0072079 IEA nephron tubule formation
GO:0072080 IEA nephron tubule development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006716 Wnt6-001 protein_coding Mus_musculus 0 1421
ENSMUST00000189544 Wnt6-002 retained_intron Mus_musculus 0 929

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