C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, N-methyl-D-aspartate 3B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000234389 GRIN3B-001 ENSG00000116032 9606 + 19:1000419-1009732 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_0005ZM CIL_0005ZM_0002 CGP 19:984271-1009732
CIL_0005ZF CIL_0005ZF_0002 CGP 19:1000419-1021179

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 IEA ionotropic glutamate receptor activity
GO:0004972 IBA N-methyl-D-aspartate selective glutamate receptor activity
GO:0005234 IBA:IEA extracellular-glutamate-gated ion channel activity
GO:0005261 ISS cation channel activity
GO:0005262 ISS calcium channel activity
GO:0016020 IEA membrane
GO:0016594 ISS glycine binding
GO:0017146 ISS N-methyl-D-aspartate selective glutamate receptor complex
GO:0030054 IEA cell junction
GO:0030425 IBA dendrite
GO:0030594 ISS neurotransmitter receptor activity
GO:0034220 IBA ion transmembrane transport
GO:0035235 ISS ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0042165 ISS neurotransmitter binding
GO:0043025 ISS neuronal cell body
GO:0045211 IBA postsynaptic membrane
GO:0051205 ISS protein insertion into membrane
GO:0051924 ISS regulation of calcium ion transport
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045085 Grin3b-001 protein_coding Mus_musculus 0 2019
ENSMUST00000149148 Grin3b-003 protein_coding Mus_musculus 0 1517
ENSMUST00000126383 Tmem259-003 retained_intron Mus_musculus 2e-40 172
ENSMUST00000132080 Tmem259-004 retained_intron Mus_musculus 2e-40 172

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