C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: goosecoid homeobox
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000238558 GSC-001 ENSG00000133937 9606 - 14:94768216-94770230 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000238558
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000238558 1.899±0.00 0.904±0.00 0.165±0.00 2.767±2.24 0.311±0.26 0.077±0.00 0.075±0.00 0.167±0.00 0.413±0.00 0.262±0.13 0.079±0.00 0.667±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003QQ CIL_0003QQ_0001 CGP 14:94612384-94770230
CIL_00019X CIL_00019X_0002 CGP 14:94768216-95158010

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001085 ISS RNA polymerase II transcription factor binding
GO:0001103 ISS RNA polymerase II repressing transcription factor binding
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0007369 NAS gastrulation
GO:0009653 IEA anatomical structure morphogenesis
GO:0014036 IMP neural crest cell fate specification
GO:0021904 IEA dorsal/ventral neural tube patterning
GO:0023019 IEA signal transduction involved in regulation of gene expression
GO:0030178 IEA negative regulation of Wnt signaling pathway
GO:0030900 IEA forebrain development
GO:0042474 ISS middle ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0043583 IEA ear development
GO:0048644 IEA muscle organ morphogenesis
GO:0048704 IEA embryonic skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021513 Gsc-001 protein_coding Mus_musculus 0 1315

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