C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor 15 (basic helix-loop-helix)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000246080 TCF15-001 ENSG00000125878 9606 - 20:603797-610398 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonOvaryPlacentaENST00000246080
Transcript ID Adipose Brain Colon Ovary Placenta
ENST00000246080 0.312±0.00 0.076±0.00 0.043±0.00 0.180±0.00 2.418±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0001 VISTA 20:23407-624368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001756 IEA somitogenesis
GO:0003016 IEA respiratory system process
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0007498 TAS mesoderm development
GO:0007517 IEA muscle organ development
GO:0009952 IEA anterior/posterior pattern specification
GO:0010468 IEA regulation of gene expression
GO:0016265 IEA death
GO:0036342 IEA post-anal tail morphogenesis
GO:0042755 IEA eating behavior
GO:0043583 IEA ear development
GO:0043588 IEA skin development
GO:0045198 IEA establishment of epithelial cell apical/basal polarity
GO:0046983 IEA protein dimerization activity
GO:0048339 IEA paraxial mesoderm development
GO:0048644 IEA muscle organ morphogenesis
GO:0048705 IEA skeletal system morphogenesis
GO:0050884 IEA neuromuscular process controlling posture
GO:0060231 IEA mesenchymal to epithelial transition
GO:1903053 IEA regulation of extracellular matrix organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000089112 Tcf15-001 protein_coding Mus_musculus 0 839

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