C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: opsin 1 (cone pigments), short-wave-sensitive
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000249389 OPN1SW-001 ENSG00000128617 9606 - 7:128772491-128775790 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000249389
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000249389 2.966±0.00 0.100±0.00 1.775±0.65 1.966±0.00 1.625±1.52 1.239±0.01 0.919±0.32 1.911±0.00 0.902±0.00 0.691±0.48 0.568±0.00 1.983±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UE CIL_0005UE_0002 CGP 7:128739292-128775790
CIL_0001YA CIL_0001YA_0001 CGP 7:128772491-128822132

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0001750 IEA photoreceptor outer segment
GO:0004872 TAS receptor activity
GO:0004930 IEA G-protein coupled receptor activity
GO:0005887 TAS integral component of plasma membrane
GO:0007165 TAS signal transduction
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007601 IEA visual perception
GO:0007602 TAS phototransduction
GO:0007603 TAS phototransduction, visible light
GO:0009881 IEA photoreceptor activity
GO:0016021 IEA integral component of membrane
GO:0018298 IEA protein-chromophore linkage
GO:0042622 TAS photoreceptor outer segment membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080428 Opn1sw-001 protein_coding Mus_musculus 0 1170
ENSDART00000110647 CCKBR (2 of 2)-201 protein_coding Danio_rerio 0.00002 55

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