C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080428 Opn1sw-001 ENSMUSG00000058831 10090 - 6:29376671-29380513 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FD CIL_0004FD_0002 CGP 6:29319140-29377110
CIL_0005UE CIL_0005UE_0003 CGP 6:29348069-29388468
CIL_0001YA CIL_0001YA_0002 CGP 6:29376671-29426994

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001750 IDA photoreceptor outer segment
GO:0004930 IEA G-protein coupled receptor activity
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007601 IEA visual perception
GO:0007602 IEA phototransduction
GO:0009881 IEA photoreceptor activity
GO:0016021 IEA integral component of membrane
GO:0018298 IEA protein-chromophore linkage

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000110647 CCKBR (2 of 2)-201 protein_coding Danio_rerio 0.0000009 60
ENST00000249389 OPN1SW-001 protein_coding Homo_sapiens 0 1170

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