C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myogenic differentiation 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000250003 MYOD1-001 ENSG00000129152 9606 + 11:17719568-17722131 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartMusclePlacentaTestisENST00000250003
Transcript ID Brain Breast Heart Muscle Placenta Testis
ENST00000250003 0.112±0.00 0.304±0.02 0.112±0.00 4.661±0.63 0.423±0.29 0.552±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000365 CIL_000365_0001 CGP 11:17547373-17722131
CIL_000448 CIL_000448_0001 CGP 11:17719568-17783055

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000381 IEA regulation of alternative mRNA splicing, via spliceosome
GO:0000790 ISS nuclear chromatin
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001047 ISS core promoter binding
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003705 TAS RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0003713 TAS transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 TAS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 ISS transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006468 TAS protein phosphorylation
GO:0007517 TAS:IEA muscle organ development
GO:0007518 IEA myoblast fate determination
GO:0007519 TAS skeletal muscle tissue development
GO:0008134 IEA transcription factor binding
GO:0009267 IEA cellular response to starvation
GO:0014904 IDA myotube cell development
GO:0014908 IEA myotube differentiation involved in skeletal muscle regeneration
GO:0019899 IEA enzyme binding
GO:0030016 IEA myofibril
GO:0031490 ISS chromatin DNA binding
GO:0031625 IEA ubiquitin protein ligase binding
GO:0035257 IPI nuclear hormone receptor binding
GO:0042692 TAS muscle cell differentiation
GO:0042693 ISS muscle cell fate commitment
GO:0043415 IEA positive regulation of skeletal muscle tissue regeneration
GO:0043484 IDA regulation of RNA splicing
GO:0043503 IEA skeletal muscle fiber adaptation
GO:0043565 IEA sequence-specific DNA binding
GO:0043966 ISS histone H3 acetylation
GO:0043967 ISS histone H4 acetylation
GO:0045445 IEA myoblast differentiation
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046982 ISS protein heterodimerization activity
GO:0046983 IEA protein dimerization activity
GO:0048741 IEA skeletal muscle fiber development
GO:0051146 IEA striated muscle cell differentiation
GO:0051149 IDA positive regulation of muscle cell differentiation
GO:0070888 ISS E-box binding
GO:0071385 IEA cellular response to glucocorticoid stimulus
GO:0071392 ISS cellular response to estradiol stimulus
GO:0071453 IEA cellular response to oxygen levels
GO:1901741 IDA positive regulation of myoblast fusion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072514 Myod1-201 protein_coding Mus_musculus 0 1007

Loading