C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000251453 RPS16-001 ENSG00000105193 9606 - 19:39433207-39435948 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000251453
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000251453 795.000±0.00 1254.200±0.00 13.593±0.00 157.904±151.03 263.478±236.06 710.421±693.40 158.050±147.27 258.313±232.49 200.785±154.94 619.892±605.36 451.364±370.61 1558.559±1288.75 1411.805±729.98 402.990±297.60

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IDA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006364 IMP rRNA processing
GO:0006412 NAS:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015935 IDA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0042274 IMP ribosomal small subunit biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000082134 Rps16-001 protein_coding Mus_musculus 0 599
ENSMUST00000155805 Rps16-003 processed_transcript Mus_musculus 0 499
ENSMUST00000179126 Rps16-ps3-201 processed_pseudogene Mus_musculus 0 418
ENSMUST00000152918 Rps16-002 retained_intron Mus_musculus 0 263

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