C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000082134 Rps16-001 ENSMUSG00000037563 10090 + 7:28350652-28352696 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000082134
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000082134 485.734±161.95 234.691±40.41 929.423±94.87 314.496±202.49 473.633±234.19 393.524±143.72 202.614±40.29 378.572±74.10 649.140±478.37 418.216±60.82 166.014±15.25 645.776±412.34 540.618±337.98 157.046±62.05

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005925 IEA focal adhesion
GO:0006364 IEA rRNA processing
GO:0006412 IEA translation
GO:0015935 ISS small ribosomal subunit
GO:0016020 IEA membrane
GO:0022627 IEA cytosolic small ribosomal subunit
GO:0042274 IEA ribosomal small subunit biogenesis
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251453 RPS16-001 protein_coding Homo_sapiens 0 599
ENST00000339471 RPS16-004 protein_coding Homo_sapiens 0 263
ENST00000434475 ZNF90-201 protein_coding Homo_sapiens 0 551
ENST00000469078 ZNF90-002 nonsense_mediated_decay Homo_sapiens 0 547
ENST00000474284 ZNF90-003 processed_transcript Homo_sapiens 0 547
ENST00000477220 RPS16P9-001 processed_pseudogene Homo_sapiens 0 292
ENST00000497576 CTC-260E6.2-001 transcribed_processed_pseudogene Homo_sapiens 0 527
ENST00000595386 RPS16-008 retained_intron Homo_sapiens 0 263
ENST00000599539 RPS16-006 protein_coding Homo_sapiens 0 211
ENST00000599705 RPS16-007 protein_coding Homo_sapiens 0 477
ENST00000601390 RPS16-002 retained_intron Homo_sapiens 0 374
ENST00000601655 RPS16-003 protein_coding Homo_sapiens 0 375
ENST00000602153 RPS16-009 protein_coding Homo_sapiens 0 211

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