C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000253008 PRDM12-001 ENSG00000130711 9606 + 9:130664594-130682981 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonOvaryTestisENST00000253008
Transcript ID Adrenal Brain Colon Ovary Testis
ENST00000253008 0.033±0.00 0.139±0.12 0.021±0.00 0.060±0.00 0.066±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000936 CIL_000936_0001 VISTA 9:130178260-130779710
CIL_0008XQ CIL_0008XQ_0001 VISTA 9:130365168-130965841
CIL_0006I8 CIL_0006I8_0001 CGP 9:130578965-130682981
CIL_0006IB CIL_0006IB_0001 CGP 9:130664594-130704894

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008168 IEA methyltransferase activity
GO:0022008 IEA neurogenesis
GO:0032259 IEA methylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113470 Prdm12-001 protein_coding Mus_musculus 0 1511
ENSDART00000022348 prdm12b-201 protein_coding Danio_rerio 0 691

Loading