C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FUS RNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000254108 FUS-001 ENSG00000089280 9606 + 16:31180110-31194871 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000254108
Transcript ID Muscle
ENST00000254108 0.751±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00044X CIL_00044X_0002 CGP 16:31138925-31194871

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0008219 IEA cell death
GO:0008270 IEA zinc ion binding
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106251 Fus-001 protein_coding Mus_musculus 0 2026
ENSMUST00000077609 Fus-007 protein_coding Mus_musculus 0 1989
ENSMUST00000128851 Fus-002 retained_intron Mus_musculus 0 1144
ENSMUST00000118327 Gm7199-001 processed_pseudogene Mus_musculus 0 1079
ENSMUST00000150411 Gm10167-001 processed_pseudogene Mus_musculus 0 952
ENSMUST00000174196 Fus-011 retained_intron Mus_musculus 0 800
ENSMUST00000121616 Fus-004 protein_coding Mus_musculus 0 645
ENSMUST00000123151 Fus-003 retained_intron Mus_musculus 0 534
ENSMUST00000136289 Fus-005 retained_intron Mus_musculus 0 518
ENSMUST00000154843 Fus-009 processed_transcript Mus_musculus 0 475
ENSMUST00000141997 Fus-006 protein_coding Mus_musculus 0 418
ENSMUST00000155941 Fus-010 retained_intron Mus_musculus 0 375
ENSMUST00000137464 Fus-008 processed_transcript Mus_musculus 0 298
ENSMUST00000174632 Fus-013 protein_coding Mus_musculus 0 291
ENSMUST00000172755 Fus-012 retained_intron Mus_musculus 1.00053e-42 180

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