C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 4 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000254950 VPS4A-002 ENSG00000132612 9606 + 16:69311356-69326939 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254950
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254950 35.875±0.00 6.141±0.00 14.139±8.83 18.058±12.51 6.028±0.00 5.963±3.25 20.154±16.86 16.382±0.00 9.095±4.69 4.193±0.00 20.647±6.81 18.089±8.14 27.205±12.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YA CIL_0004YA_0002 CGP 16:69187129-69322700

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000815 IDA ESCRT III complex
GO:0000910 IDA cytokinesis
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006200 NAS ATP catabolic process
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0008022 IPI protein C-terminus binding
GO:0009378 IEA four-way junction helicase activity
GO:0009838 IMP abscission
GO:0015031 IEA protein transport
GO:0016032 TAS viral process
GO:0016192 IDA vesicle-mediated transport
GO:0016197 IMP endosomal transport
GO:0016887 IEA ATPase activity
GO:0019058 TAS viral life cycle
GO:0019904 IPI protein domain specific binding
GO:0030496 IDA midbody
GO:0031565 IMP cytokinesis checkpoint
GO:0032466 IMP negative regulation of cytokinesis
GO:0042623 NAS ATPase activity, coupled
GO:0048471 IDA perinuclear region of cytoplasm
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034388 Vps4a-001 protein_coding Mus_musculus 0 1766
ENSMUST00000159703 Gm15740-001 processed_pseudogene Mus_musculus 0 1166
ENSMUST00000144527 Vps4a-002 retained_intron Mus_musculus 0 616

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