C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sortilin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000256637 SORT1-001 ENSG00000134243 9606 - 1:109309570-109397951 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000256637
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000256637 23.046±0.00 6.165±0.00 36.273±30.97 12.915±11.65 7.764±3.73 27.521±0.00 31.261±0.00 4.677±0.35 11.227±2.02 32.168±0.00 5.620±2.01 13.689±1.08 24.964±3.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098X CIL_00098X_0001 VISTA 1:108953074-109556228
CIL_00099A CIL_00099A_0001 VISTA 1:108974252-109576283
CIL_000734 CIL_000734_0002 CGP 1:109309568-109426427

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001503 IEA ossification
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005764 IEA lysosome
GO:0005769 IDA early endosome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0005905 IDA coated pit
GO:0006895 IDA Golgi to endosome transport
GO:0006897 IDA endocytosis
GO:0007186 IMP G-protein coupled receptor signaling pathway
GO:0007218 IDA neuropeptide signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0008333 IDA endosome to lysosome transport
GO:0008625 IDA extrinsic apoptotic signaling pathway via death domain receptors
GO:0009986 IDA cell surface
GO:0010465 IDA nerve growth factor receptor activity
GO:0010468 IMP regulation of gene expression
GO:0014902 IMP myotube differentiation
GO:0016021 IDA:IEA integral component of membrane
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016050 IDA vesicle organization
GO:0019899 IPI enzyme binding
GO:0030136 IDA clathrin-coated vesicle
GO:0030140 IEA trans-Golgi network transport vesicle
GO:0030379 IDA neurotensin receptor activity, non-G-protein coupled
GO:0032509 IDA endosome transport via multivesicular body sorting pathway
GO:0032868 IMP response to insulin
GO:0038180 IDA nerve growth factor signaling pathway
GO:0046323 IMP glucose import
GO:0048011 IMP neurotrophin TRK receptor signaling pathway
GO:0048227 IDA plasma membrane to endosome transport
GO:0048406 IPI nerve growth factor binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051005 IDA negative regulation of lipoprotein lipase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102632 Sort1-001 protein_coding Mus_musculus 0 3267
ENSMUST00000135636 Sort1-003 protein_coding Mus_musculus 0 734

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