C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: damage-specific DNA binding protein 2, 48kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000256996 DDB2-001 ENSG00000134574 9606 + 11:47214942-47239240 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartLungMuscleOvaryPlacentaENST00000256996
Transcript ID Adipose Breast Colon Heart Lung Muscle Ovary Placenta
ENST00000256996 5.413±0.00 6.453±0.00 2.451±0.00 0.668±0.51 1.444±0.00 1.885±0.00 4.559±4.28 4.293±2.36

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0000718 TAS nucleotide-excision repair, DNA damage removal
GO:0003677 TAS DNA binding
GO:0003684 IDA damaged DNA binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005654 TAS nucleoplasm
GO:0006281 TAS DNA repair
GO:0006289 TAS nucleotide-excision repair
GO:0006290 IEA pyrimidine dimer repair
GO:0009411 IDA response to UV
GO:0031465 IDA Cul4B-RING E3 ubiquitin ligase complex
GO:0035518 IDA histone H2A monoubiquitination
GO:0043234 IDA protein complex
GO:0051865 IDA protein autoubiquitination
GO:0070914 IDA UV-damage excision repair

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028696 Ddb2-001 protein_coding Mus_musculus 0 1201
ENSMUST00000111352 Ddb2-002 protein_coding Mus_musculus 0 1114
ENSMUST00000152277 Ddb2-004 processed_transcript Mus_musculus 0 726
ENSMUST00000135927 Ddb2-005 processed_transcript Mus_musculus 0 442
ENSMUST00000150427 Ddb2-003 processed_transcript Mus_musculus 0 300
ENSMUST00000002172 Acp2-001 protein_coding Mus_musculus 2e-37 161

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