C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: damage specific DNA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028696 Ddb2-001 ENSMUSG00000002109 10090 - 2:91211856-91236982 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderLiverTestisENSMUST00000028696
Transcript ID Adrenal Bladder Liver Testis
ENSMUST00000028696 10.780±1.58 8.710±0.00 3.342±0.00 4.630±0.51

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IEA protein polyubiquitination
GO:0003684 IEA damaged DNA binding
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005634 IEA nucleus
GO:0006290 IMP pyrimidine dimer repair
GO:0009411 IEA response to UV
GO:0031465 IEA Cul4B-RING E3 ubiquitin ligase complex
GO:0035518 IEA histone H2A monoubiquitination
GO:0043234 IEA protein complex
GO:0051865 IEA protein autoubiquitination
GO:0070914 IEA UV-damage excision repair

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000256996 DDB2-001 protein_coding Homo_sapiens 0 1201
ENST00000378600 DDB2-006 protein_coding Homo_sapiens 0 244
ENST00000378601 DDB2-002 nonsense_mediated_decay Homo_sapiens 0 409
ENST00000378603 DDB2-007 protein_coding Homo_sapiens 0 846
ENST00000612309 DDB2-003 retained_intron Homo_sapiens 0 411
ENST00000614884 DDB2-016 retained_intron Homo_sapiens 0 267
ENST00000616278 DDB2-004 nonsense_mediated_decay Homo_sapiens 0 387
ENST00000617022 DDB2-005 retained_intron Homo_sapiens 0 267
ENST00000617847 DDB2-008 nonsense_mediated_decay Homo_sapiens 0 267
ENST00000620515 DDB2-009 processed_transcript Homo_sapiens 0.0000000000003 79

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