C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP38 pre-mRNA processing factor 38 (yeast) domain containing A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079213 Prpf38a-001 ENSMUSG00000063800 10090 - 4:108564870-108579336 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079213
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079213 5.220±1.27 1.188±0.44 14.994±1.76 24.440±11.62 2.325±0.49 2.837±1.23 2.359±0.56 3.278±0.47 7.780±6.37 3.626±0.70 5.144±0.59 7.536±7.34 21.297±7.19 12.202±9.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CE CIL_0001CE_0002 CGP 4:108563172-108614833

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257181 PRPF38A-002 protein_coding Homo_sapiens 0 1234
ENST00000438179 PRPF38AP2-001 processed_pseudogene Homo_sapiens 0 830
ENST00000451976 PRPF38AP1-001 processed_pseudogene Homo_sapiens 0 917
ENST00000474048 PRPF38A-003 processed_transcript Homo_sapiens 0 512
ENST00000487160 PRPF38A-001 processed_transcript Homo_sapiens 0 625

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