C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: desmoglein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000257192 DSG1-001 ENSG00000134760 9606 + 18:31318089-31357029 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaENST00000257192
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENST00000257192 0.463±0.00 0.170±0.00 0.083±0.03 0.164±0.07 0.010±0.00 0.102±0.04 5.610±0.00 0.010±0.00 0.007±0.00 0.528±0.40 0.339±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FH CIL_0002FH_0002 CGP 18:31129236-31357029
CIL_0006EL CIL_0006EL_0001 CGP 18:31318089-31414912

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 NAS:IEA calcium ion binding
GO:0005829 TAS cytosol
GO:0005886 TAS plasma membrane
GO:0005911 IDA cell-cell junction
GO:0006915 TAS apoptotic process
GO:0006921 TAS cellular component disassembly involved in execution phase of apoptosis
GO:0007043 NAS cell-cell junction assembly
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0009898 IDA cytoplasmic side of plasma membrane
GO:0015643 NAS toxic substance binding
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016324 IEA apical plasma membrane
GO:0016328 IEA lateral plasma membrane
GO:0016337 NAS single organismal cell-cell adhesion
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0030057 NAS desmosome
GO:0032570 IEA response to progesterone
GO:0045295 IPI gamma-catenin binding
GO:0050821 IDA protein stabilization
GO:0060135 IEA maternal process involved in female pregnancy
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077146 Dsg1a-001 protein_coding Mus_musculus 0 1493
ENSMUST00000076737 Dsg1b-001 protein_coding Mus_musculus 0 1480
ENSMUST00000054128 Dsg1c-001 protein_coding Mus_musculus 0 1179
ENSMUST00000121262 Gm14986-001 processed_pseudogene Mus_musculus 0 516

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