C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002FH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000039677-ENSDARG00000039665 CGP 7955 20:7437162-7552396
GeneTranscriptPositionBiotype
ENSDARG00000039665 (CABZ01055869.1)
Uncharacterized protein 		ENSDART00000057981 (CABZ01055869.1-201) 7532695-7552396 protein_coding
ENSDARG00000039677 (dsc2l)
desmocollin 2 like 		ENSDART00000100060 (dsc2l-001) 7437162-7468565 protein_coding
ENSDARG00000076945 (dsg2)
desmoglein 2 		ENSDART00000108851 (dsg2-201) 7502649-7526923 processed_transcript
ENSDART00000140222 (dsg2-001) 7502541-7506058 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0002FH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000134765-ENSG00000134760 CGP 9606 18:31129236-31357029
GeneTranscriptPositionBiotype
ENSG00000134760 (DSG1)
desmoglein 1 		ENST00000257192 (DSG1-001) 31318089-31357029 protein_coding
ENST00000462981 (DSG1-002) 31343631-31355667 protein_coding
ENSG00000134765 (DSC1)
desmocollin 1 		ENST00000257197 (DSC1-001) 31129236-31162856 protein_coding
ENST00000257198 (DSC1-002) 31129236-31162856 protein_coding
ENSG00000207019 (RNU6-167P)
RNA, U6 small nuclear 167, pseudogene 		ENST00000384292 (RNU6-167P-201) 31345362-31345467 snRNA
ENSG00000263698 (RP11-408H20.3)
 ENST00000582307 (RP11-408H20.3-001) 31131456-31132494 antisense
ENSG00000265888 (DSCAS)
DSC1/DSC2 antisense RNA 		ENST00000581836 (DSCAS-001) 31101588-31162789 antisense
ENSG00000266729 (DSG1-AS1)
DSG1 antisense RNA 1 		ENST00000578119 (DSG1-AS1-001) 31343384-31353936 antisense
ENST00000578477 (DSG1-AS1-004) 31347668-31426988 antisense
ENST00000581452 (DSG1-AS1-003) 31353962-31401667 antisense
ENST00000581856 (DSG1-AS1-002) 31343368-31426927 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0002FH_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000044322-ENSMUSG00000034774 CGP 10090 18:20084703-20285031
GeneTranscriptPositionBiotype
ENSMUSG00000034774 (Dsg1c)
desmoglein 1 gamma 		ENSMUST00000054128 (Dsg1c-001) 20247340-20285031 protein_coding
ENSMUSG00000044322 (Dsc1)
desmocollin 1 		ENSMUST00000038710 (Dsc1-201) 20084703-20114773 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002FH_0001ENSDARG00000039665ENSDART00000057981ENSDARG00000039677ENSDART00000100060ENSDARG00000076945ENSDART00000108851ENSDART00000140222CIL_0002FH_0002ENSG00000134760ENST00000257192ENST00000462981ENSG00000134765ENST00000257197ENST00000257198ENSG00000207019ENST00000384292ENSG00000263698ENST00000582307ENSG00000265888ENST00000581836ENSG00000266729ENST00000578119ENST00000578477ENST00000581452ENST00000581856CIL_0002FH_0003ENSMUSG00000034774ENSMUST00000054128ENSMUSG00000044322ENSMUST00000038710
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002FH_0001ENSDARG00000039665ENSDART00000057981ENSDARG00000039677ENSDART00000100060ENSDARG00000076945ENSDART00000108851ENSDART00000140222CIL_0002FH_0002ENSG00000134760ENST00000257192ENST00000462981ENSG00000134765ENST00000257197ENST00000257198ENSG00000207019ENST00000384292ENSG00000263698ENST00000582307ENSG00000265888ENST00000581836ENSG00000266729ENST00000578119ENST00000581452CIL_0002FH_0003ENSMUSG00000034774ENSMUST00000054128ENSMUSG00000044322ENSMUST00000038710
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000039665 ENSDART00000057981 N/A N/A N/A 0.063±0.03 N/A N/A 0.573±0.54 0.077±0.06 N/A N/A 0.460±0.00 N/A N/A N/A
ENSDARG00000039677 ENSDART00000100060 N/A N/A N/A 2.332±0.75 N/A N/A 12.514±7.51 4.173±2.96 1.384±0.00 N/A 2.329±0.00 N/A N/A N/A
ENSDARG00000076945 ENSDART00000108851 N/A N/A N/A 1.032±0.61 N/A N/A 6.447±2.15 6.211±2.92 0.071±0.00 N/A 3.244±0.00 N/A N/A N/A
ENSDART00000140222 N/A N/A N/A N/A N/A N/A N/A N/A 0.257±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000134760 ENST00000257192 0.463±0.00 N/A 0.170±0.00 0.083±0.03 0.164±0.07 0.010±0.00 0.102±0.04 5.610±0.00 0.010±0.00 N/A 0.007±0.00 0.528±0.40 0.339±0.27 N/A
ENST00000462981 N/A N/A N/A 0.219±0.00 N/A 0.010±0.00 N/A N/A 0.007±0.00 N/A N/A N/A 0.085±0.03 1.362±0.73
ENSG00000134765 ENST00000257197 N/A N/A 0.327±0.00 N/A N/A N/A N/A 0.162±0.00 N/A N/A 0.016±0.00 0.016±0.00 0.170±0.00 N/A
ENST00000257198 0.271±0.00 0.058±0.00 0.046±0.00 0.093±0.01 0.060±0.04 0.026±0.02 1.338±0.00 0.085±0.03 0.057±0.05 0.013±0.01 N/A 0.035±0.03 0.052±0.01 0.039±0.03
ENSG00000207019 ENST00000384292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.059±0.00 N/A N/A
ENSG00000263698 ENST00000582307 N/A N/A N/A 0.054±0.00 N/A 0.382±0.00 N/A 0.112±0.00 N/A N/A N/A 0.045±0.02 N/A 0.058±0.00
ENSG00000265888 ENST00000581836 N/A N/A N/A 0.386±0.00 N/A N/A N/A N/A 0.063±0.00 N/A N/A N/A 0.126±0.00 N/A
ENSG00000266729 ENST00000578119 N/A N/A N/A N/A N/A N/A N/A N/A 1.003±0.00 N/A N/A 0.660±0.00 N/A 2.782±0.00
ENST00000578477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581452 N/A N/A N/A N/A 0.309±0.00 N/A 0.568±0.00 N/A 0.081±0.00 N/A N/A N/A N/A N/A
ENST00000581856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034774 ENSMUST00000054128 0.061±0.01 N/A 0.002±0.00 0.073±0.10 0.041±0.01 0.033±0.02 0.015±0.00 N/A 0.254±0.28 0.018±0.01 0.022±0.01 0.043±0.03 0.017±0.00 0.252±0.03
ENSMUSG00000044322 ENSMUST00000038710 N/A N/A 0.004±0.00 0.026±0.00 0.208±0.17 N/A N/A N/A 0.012±0.01 1.554±0.00 0.037±0.01 N/A 0.022±0.02 0.039±0.02

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