C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mediator complex subunit 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258648 MED4-001 ENSG00000136146 9606 - 13:48075956-48095104 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000258648
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000258648 4.926±0.00 7.485±0.00 0.261±0.00 3.642±1.48 3.396±2.55 3.969±1.86 5.102±0.00 2.990±2.02 2.306±1.05 2.001±1.32 1.974±1.76 5.868±3.64 7.596±2.39 9.163±4.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00021H CIL_00021H_0002 CGP 13:48053323-48270357

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001104 IDA:IEA RNA polymerase II transcription cofactor activity
GO:0003712 IDA transcription cofactor activity
GO:0004872 IDA receptor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006367 IDA transcription initiation from RNA polymerase II promoter
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016592 IDA:IEA mediator complex
GO:0030374 NAS ligand-dependent nuclear receptor transcription coactivator activity
GO:0030518 IDA intracellular steroid hormone receptor signaling pathway
GO:0030521 IDA androgen receptor signaling pathway
GO:0042809 NAS vitamin D receptor binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046966 IDA thyroid hormone receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022705 Med4-201 protein_coding Mus_musculus 0 928
ENSMUST00000118975 Gm9434-001 processed_pseudogene Mus_musculus 0 915

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