C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomodulin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000259365 TMOD1-001 ENSG00000136842 9606 + 9:97501639-97601748 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000259365
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000259365 5.000±0.00 6.398±0.00 4.678±3.21 2.920±0.00 8.518±0.00 21.016±18.12 1.315±0.66 2.712±0.49 4.154±3.51 51.014±0.00 6.038±0.11 0.584±0.00 3.655±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007HJ CIL_0007HJ_0002 CGP 9:97411950-97601748
CIL_0002JE CIL_0002JE_0001 CGP 9:97501180-97633575

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005523 IEA tropomyosin binding
GO:0005829 TAS cytosol
GO:0006936 IEA muscle contraction
GO:0008180 IDA COP9 signalosome
GO:0008344 IEA adult locomotory behavior
GO:0016020 IEA membrane
GO:0030016 IEA myofibril
GO:0030049 TAS muscle filament sliding
GO:0030239 IEA myofibril assembly
GO:0030863 IEA cortical cytoskeleton
GO:0051694 IEA pointed-end actin filament capping

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107773 Tmod1-001 protein_coding Mus_musculus 0 1506
ENSMUST00000128689 Tmod1-003 processed_transcript Mus_musculus 0 976
ENSMUST00000156200 Tmod1-002 protein_coding Mus_musculus 0 444

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