C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: piggyBac transposable element derived 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000259883 PGBD1-001 ENSG00000137338 9606 + 6:28281572-28302549 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000259883
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000259883 1.132±0.00 2.624±0.00 2.132±0.00 1.042±0.24 0.716±0.00 0.784±0.00 0.771±0.34 0.539±0.40 0.524±0.00 0.242±0.00 1.168±1.24 0.793±0.16 2.602±0.78

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005044 IEA scavenger receptor activity
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006898 IEA receptor-mediated endocytosis
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099719 Pgbd1-201 protein_coding Mus_musculus 0 1158
ENSMUST00000148071 Pgbd1-001 protein_coding Mus_musculus 0 1158
ENSMUST00000122872 Pgbd1-004 protein_coding Mus_musculus 0 1158
ENSMUST00000151743 Pgbd1-002 protein_coding Mus_musculus 0 1158
ENSMUST00000145494 Pgbd1-003 protein_coding Mus_musculus 0 305
ENSMUST00000099720 Zscan12-002 protein_coding Mus_musculus 9e-28 130
ENSMUST00000053293 Zscan12-001 protein_coding Mus_musculus 9e-28 130
ENSMUST00000110481 Zkscan8-002 protein_coding Mus_musculus 1e-26 126
ENSMUST00000156674 Zkscan8-003 protein_coding Mus_musculus 1e-26 126
ENSMUST00000045228 Zkscan8-001 protein_coding Mus_musculus 1e-26 126
ENSMUST00000063980 Zkscan7-201 protein_coding Mus_musculus 3e-23 115
ENSMUST00000062609 Zkscan4-001 protein_coding Mus_musculus 9e-23 113
ENSMUST00000076238 Gm10065-201 protein_coding Mus_musculus 9e-23 113
ENSMUST00000117721 Zkscan3-004 protein_coding Mus_musculus 4e-21 108
ENSMUST00000070785 Zkscan3-003 protein_coding Mus_musculus 4e-21 108
ENSMUST00000116433 Zkscan3-002 protein_coding Mus_musculus 4e-21 108
ENSMUST00000116434 Zkscan3-001 protein_coding Mus_musculus 4e-21 108

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