C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type VIII, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144810 COL8A1 9606 + 3:99638475-99799226 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261037 COL8A1-001 99638475-99799226 protein_coding
  ENST00000273342 COL8A1-201 99638596-99796733 protein_coding
  ENST00000452013 COL8A1-003 99638475-99794242 protein_coding
  ENST00000462604 COL8A1-006 99707071-99744987 processed_transcript
  ENST00000463753 COL8A1-002 99638475-99680462 processed_transcript
  ENST00000474648 COL8A1-005 99638475-99703618 processed_transcript
  ENST00000483969 COL8A1-004 99638475-99691871 processed_transcript
  ENST00000621757 COL8A1-007 99638622-99794508 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261037ENST00000273342ENST00000452013ENST00000463753ENST00000474648ENST00000621757
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261037 0.879±0.00 0.335±0.00 0.031±0.00 9.331±0.00 1.092±0.00 0.183±0.00 0.053±0.00 1.613±0.00 6.249±0.00 0.311±0.00 3.763±0.00 0.524±0.11 N/A
ENST00000273342 0.583±0.00 0.217±0.00 0.145±0.00 N/A 0.759±0.00 0.289±0.00 0.043±0.00 N/A N/A N/A N/A N/A N/A
ENST00000452013 N/A N/A 0.757±0.00 N/A N/A 3.183±0.00 N/A 8.851±0.00 28.724±0.00 N/A 13.851±0.00 N/A N/A
ENST00000463753 N/A 0.353±0.00 N/A N/A N/A 0.327±0.00 N/A N/A N/A N/A N/A N/A 0.054±0.00
ENST00000474648 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.373±0.00 N/A N/A N/A
ENST00000621757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.871±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00059H CIL_00059H_0002 CGP 3:98795941-99799226

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005591 TAS collagen type VIII trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007155 IEA cell adhesion
GO:0010811 IEA positive regulation of cell-substrate adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IDA extracellular matrix
GO:0035987 IEP endodermal cell differentiation
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0048593 IEA camera-type eye morphogenesis
GO:0050673 IEA epithelial cell proliferation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003533 col8a1b collagen, type VIII, alpha 1b protein_coding Danio_rerio
ENSDARG00000077403 col8a1a collagen, type VIII, alpha 1a protein_coding Danio_rerio
ENSMUSG00000068196 Col8a1 collagen, type VIII, alpha 1 protein_coding Mus_musculus

Loading