C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 30 (zinc transporter), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261867 SLC30A4-001 ENSG00000104154 9606 - 15:45479611-45522807 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261867
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261867 2.375±0.00 1.512±0.00 1.060±0.00 1.768±0.70 1.538±0.29 0.621±0.14 1.500±0.72 0.443±0.00 0.363±0.00 0.271±0.11 1.013±0.82 1.061±0.20 4.295±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004C8 CIL_0004C8_0002 CGP 15:45430529-45522807
CIL_0004QN CIL_0004QN_0002 CGP 15:45479611-45615999

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005385 TAS zinc ion transmembrane transporter activity
GO:0005737 IDA cytoplasm
GO:0005770 IDA late endosome
GO:0006812 IEA cation transport
GO:0008324 IEA cation transmembrane transporter activity
GO:0009636 IDA response to toxic substance
GO:0016021 IEA integral component of membrane
GO:0055069 IEA zinc ion homeostasis
GO:0055085 IEA transmembrane transport
GO:0061088 IDA regulation of sequestering of zinc ion
GO:0071577 TAS zinc ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005952 Slc30a4-001 protein_coding Mus_musculus 0 1664
ENSMUST00000099457 Slc30a4-002 protein_coding Mus_musculus 0 1007
ENSMUST00000116286 Stk40-201 protein_coding Mus_musculus 0.0001 55
ENSMUST00000127092 Stk40-002 processed_transcript Mus_musculus 0.0001 55

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