C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262043 PHF3-001 ENSG00000118482 9606 + 6:63635836-63715481 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLiverLungMuscleOvaryENST00000262043
Transcript ID Brain Colon Heart Liver Lung Muscle Ovary
ENST00000262043 1.128±0.00 1.283±0.00 1.655±0.00 3.043±0.00 4.783±0.00 0.353±0.00 2.869±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007275 NAS multicellular organismal development
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186733 Phf3-003 protein_coding Mus_musculus 0 4329
ENSMUST00000088310 Phf3-201 protein_coding Mus_musculus 0 4327
ENSMUST00000186105 Phf3-002 retained_intron Mus_musculus 0 1088
ENSMUST00000191329 Phf3-010 protein_coding Mus_musculus 0 1044
ENSMUST00000191245 Phf3-001 retained_intron Mus_musculus 0 929
ENSMUST00000191064 Phf3-006 nonsense_mediated_decay Mus_musculus 0 791
ENSMUST00000188780 Phf3-007 protein_coding Mus_musculus 0 571
ENSMUST00000185521 Phf3-011 retained_intron Mus_musculus 0 523
ENSMUST00000190190 Phf3-009 retained_intron Mus_musculus 0 372
ENSMUST00000187968 Phf3-012 protein_coding Mus_musculus 0 333
ENSMUST00000117483 Gm13378-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000188847 Phf3-004 retained_intron Mus_musculus 4.00001e-40 172
ENSMUST00000187600 Phf3-008 processed_transcript Mus_musculus 1e-39 171

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