C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262056 EIF4B-001 ENSG00000063046 9606 + 12:53006158-53042209 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262056
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262056 158.408±0.00 22.117±0.00 26.503±4.02 39.485±0.96 93.777±56.62 30.524±2.11 38.844±6.30 38.528±30.30 77.094±33.05 70.324±40.53 117.598±83.77 56.851±8.51 45.477±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006TF CIL_0006TF_0001 CGP 12:52948871-53042209
CIL_00033N CIL_00033N_0002 CGP 12:53006158-53064372

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0003743 IEA translation initiation factor activity
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0006412 TAS translation
GO:0006413 TAS translational initiation
GO:0006446 TAS regulation of translational initiation
GO:0008286 TAS insulin receptor signaling pathway
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016281 TAS eukaryotic translation initiation factor 4F complex
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169681 Eif4b-201 protein_coding Mus_musculus 0 2911
ENSMUST00000117365 Gm4784-001 processed_pseudogene Mus_musculus 0 2001
ENSMUST00000161563 Gm15833-001 processed_pseudogene Mus_musculus 0 333

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