C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: YY1 transcription factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021692 Yy1-001 ENSMUSG00000021264 10090 + 12:108792973-108816632 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021692
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021692 5.169±0.70 15.986±1.92 18.054±0.11 19.704±4.21 12.117±8.57 12.711±2.37 1.495±0.05 4.473±1.73 11.288±8.09 7.158±2.32 5.967±0.48 20.879±10.05 26.040±2.83 4.186±1.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00032R CIL_00032R_0002 CGP 12:108686792-108816632
CIL_0004AD CIL_0004AD_0002 CGP 12:108792973-108835883

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000400 IEA four-way junction DNA binding
GO:0000724 IEA double-strand break repair via homologous recombination
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003723 ISO RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006403 IMP RNA localization
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007283 IMP spermatogenesis
GO:0009952 IGI anterior/posterior pattern specification
GO:0010225 IMP response to UV-C
GO:0010628 IDA positive regulation of gene expression
GO:0030154 IEA cell differentiation
GO:0031011 IEA Ino80 complex
GO:0031519 IDA PcG protein complex
GO:0034644 IEA cellular response to UV
GO:0034696 IEA response to prostaglandin F
GO:0044212 ISO transcription regulatory region DNA binding
GO:0046872 IEA metal ion binding
GO:0048593 IGI camera-type eye morphogenesis
GO:0051276 IMP chromosome organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000038745 yy1b-001 protein_coding Danio_rerio 0 470
ENSDART00000148632 yy1b-002 protein_coding Danio_rerio 1e-35 156
ENST00000262238 YY1-001 protein_coding Homo_sapiens 0 3725
ENST00000427625 YY1P1-001 processed_pseudogene Homo_sapiens 0 538
ENST00000429584 YY2-001 protein_coding Homo_sapiens 0 734
ENST00000438766 YY1P2-001 processed_pseudogene Homo_sapiens 3e-18 97
ENST00000465888 MBTPS2-003 processed_transcript Homo_sapiens 0 433
ENST00000553625 YY1-003 protein_coding Homo_sapiens 0 525
ENST00000554371 YY1-006 protein_coding Homo_sapiens 0 239
ENST00000554579 YY1-005 retained_intron Homo_sapiens 0 830
ENST00000554804 YY1-004 protein_coding Homo_sapiens 0 1177
ENST00000623799 YY1-002 TEC Homo_sapiens 0 1735

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