C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 20, type 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262717 CDH20-001 ENSG00000101542 9606 + 18:61333582-61555773 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLungMuscleOvaryPlacentaENST00000262717
Transcript ID Bladder Brain Breast Heart Kidney Lung Muscle Ovary Placenta
ENST00000262717 0.094±0.00 3.136±0.00 1.124±0.00 0.035±0.00 0.065±0.03 0.022±0.00 1.214±0.00 0.018±0.01 0.058±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007FG CIL_0007FG_0001 CGP 18:61333582-61894247

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000062528 Cdh20-001 protein_coding Mus_musculus 0 3386

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