C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007FG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101542-ENSG00000176641 CGP 9606 18:61333582-61894247
GeneTranscriptPositionBiotype
ENSG00000101542 (CDH20)
cadherin 20, type 2 		ENST00000262717 (CDH20-001) 61333582-61555773 protein_coding
ENST00000536675 (CDH20-201) 61490542-61555132 protein_coding
ENST00000538374 (CDH20-002) 61334273-61554695 protein_coding
ENST00000587582 (CDH20-003) 61549866-61554358 retained_intron
ENSG00000176641 (RNF152)
ring finger protein 152 		ENST00000312828 (RNF152-001) 61808063-61893759 protein_coding
ENST00000588064 (RNF152-003) 61875005-61893734 processed_transcript
ENST00000588396 (RNF152-002) 61888125-61894247 processed_transcript
ENST00000591306 (RNF152-004) 61816122-61894231 protein_coding
ENST00000619552 (RNF152-005) 61888063-61888854 processed_transcript
ENSG00000206769 (RNU6-116P)
RNA, U6 small nuclear 116, pseudogene 		ENST00000384042 (RNU6-116P-201) 61391595-61391703 snRNA
ENSG00000243256 (RPL30P14)
ribosomal protein L30 pseudogene 14 		ENST00000482744 (RPL30P14-001) 61404858-61405205 processed_pseudogene
ENSG00000260440 (RP11-1096D5.1)
long intergenic non-protein coding RNA 1544 		ENST00000567801 (RP11-1096D5.1-001) 61748176-61756646 lincRNA
ENSG00000267175 (RP11-879F14.1)
 ENST00000590199 (RP11-879F14.1-005) 61592375-61748754 lincRNA
ENST00000590357 (RP11-879F14.1-001) 61611637-61628072 lincRNA
ENST00000590968 (RP11-879F14.1-002) 61592375-61748832 lincRNA
ENSG00000267279 (RP11-879F14.2)
 ENST00000586949 (RP11-879F14.2-001) 61606068-61606916 lincRNA
ENST00000587754 (RP11-879F14.2-002) 61585746-61606657 lincRNA
ENSG00000267316 (RP11-879F14.3)
 ENST00000585706 (RP11-879F14.3-001) 61571348-61579456 lincRNA
ENST00000587138 (RP11-879F14.3-002) 61571342-61577151 lincRNA
CIL_0007FG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050840-ENSMUSG00000047496 CGP 10090 1:104768529-105356710
GeneTranscriptPositionBiotype
ENSMUSG00000047496 (Rnf152)
ring finger protein 152 		ENSMUST00000058688 (Rnf152-001) 105276914-105356670 protein_coding
ENSMUST00000172299 (Rnf152-201) 105276917-105356710 protein_coding
ENSMUSG00000050840 (Cdh20)
cadherin 20 		ENSMUST00000062528 (Cdh20-001) 104768529-104995481 protein_coding
ENSMUSG00000097482 (Gm17634)
predicted gene, 17634 		ENSMUST00000181383 (Gm17634-001) 105356007-105361630 antisense
ENSMUST00000186958 (Gm17634-003) 105357149-105357512 antisense
ENSMUST00000189938 (Gm17634-002) 105356763-105361737 antisense
ENSMUSG00000099582 (RP24-286I24.2)
predicted gene 29014 		ENSMUST00000191422 (RP24-286I24.2-001) 105321121-105321446 processed_pseudogene
ENSMUSG00000099669 (RP24-209M20.1)
predicted gene 29012 		ENSMUST00000187882 (RP24-209M20.1-001) 105116454-105127366 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007FG_0001ENSG00000101542ENST00000262717ENST00000536675ENST00000538374ENST00000587582ENSG00000176641ENST00000312828ENST00000588064ENST00000588396ENST00000591306ENST00000619552ENSG00000206769ENST00000384042ENSG00000243256ENST00000482744ENSG00000260440ENST00000567801ENSG00000267175ENST00000590199ENST00000590357ENST00000590968ENSG00000267279ENST00000586949ENST00000587754ENSG00000267316ENST00000585706ENST00000587138CIL_0007FG_0002ENSMUSG00000047496ENSMUST00000058688ENSMUST00000172299ENSMUSG00000050840ENSMUST00000062528ENSMUSG00000097482ENSMUST00000181383ENSMUST00000186958ENSMUST00000189938ENSMUSG00000099582ENSMUST00000191422ENSMUSG00000099669ENSMUST00000187882
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007FG_0001ENSG00000101542ENST00000262717ENST00000536675ENST00000538374ENST00000587582ENSG00000176641ENST00000312828ENST00000619552ENSG00000206769ENST00000384042ENSG00000243256ENST00000482744ENSG00000260440ENST00000567801ENSG00000267175ENST00000590199ENST00000590357ENST00000590968ENSG00000267279ENST00000586949ENST00000587754ENSG00000267316ENST00000585706ENST00000587138CIL_0007FG_0002ENSMUSG00000047496ENSMUST00000058688ENSMUST00000172299ENSMUSG00000050840ENSMUST00000062528ENSMUSG00000097482ENSMUST00000181383ENSMUST00000189938ENSMUSG00000099582ENSMUST00000191422ENSMUSG00000099669ENSMUST00000187882
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101542 ENST00000262717 N/A N/A 0.094±0.00 3.136±0.00 1.124±0.00 N/A 0.035±0.00 0.065±0.03 N/A 0.022±0.00 1.214±0.00 0.018±0.01 0.058±0.00 N/A
ENST00000536675 0.143±0.00 N/A N/A 2.042±0.95 0.442±0.00 N/A N/A N/A N/A N/A N/A N/A 0.031±0.01 0.118±0.01
ENST00000538374 N/A 0.027±0.00 N/A N/A 0.134±0.00 0.056±0.00 N/A 0.022±0.00 0.120±0.00 N/A N/A 0.014±0.00 N/A N/A
ENST00000587582 N/A N/A 1.765±0.00 N/A N/A N/A 0.800±0.00 N/A 0.038±0.00 N/A N/A N/A 0.073±0.00 N/A
ENSG00000176641 ENST00000312828 N/A N/A N/A 0.517±0.00 N/A N/A N/A N/A N/A 0.803±0.00 N/A 0.521±0.00 N/A N/A
ENST00000588064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588396 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.061±0.00 N/A N/A N/A
ENSG00000206769 ENST00000384042 N/A N/A N/A 0.184±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000243256 ENST00000482744 0.178±0.00 0.037±0.00 1.098±0.00 0.181±0.00 0.035±0.00 0.101±0.00 0.217±0.00 0.036±0.00 N/A 0.067±0.00 0.956±0.61 0.490±0.00 N/A 0.065±0.00
ENSG00000260440 ENST00000567801 0.018±0.00 0.066±0.00 0.047±0.00 0.052±0.00 0.026±0.00 0.032±0.02 0.088±0.00 0.081±0.07 0.058±0.04 0.079±0.00 N/A 0.008±0.00 N/A 0.037±0.00
ENSG00000267175 ENST00000590199 N/A N/A 1.512±0.00 N/A 0.335±0.00 0.103±0.00 N/A 0.483±0.00 0.355±0.00 N/A N/A N/A N/A N/A
ENST00000590357 N/A 0.201±0.00 0.675±0.00 0.105±0.00 0.025±0.00 N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A 0.070±0.00
ENST00000590968 N/A N/A N/A N/A N/A N/A N/A N/A 0.143±0.00 N/A N/A N/A N/A N/A
ENSG00000267279 ENST00000586949 0.487±0.00 0.265±0.00 N/A 0.073±0.00 1.627±0.00 0.252±0.00 1.499±1.20 0.502±0.00 0.240±0.00 1.688±0.00 N/A 0.175±0.09 1.943±0.66 0.948±0.50
ENST00000587754 N/A N/A N/A 0.116±0.00 N/A N/A N/A N/A N/A 0.315±0.00 N/A N/A 0.264±0.00 0.186±0.00
ENSG00000267316 ENST00000585706 N/A N/A N/A N/A 0.104±0.00 N/A 0.051±0.00 N/A N/A 0.701±0.00 N/A 0.055±0.00 0.234±0.00 1.101±0.00
ENST00000587138 0.222±0.00 0.098±0.00 N/A 0.066±0.00 N/A N/A 0.037±0.00 0.221±0.00 0.084±0.00 N/A N/A N/A 0.100±0.00 0.385±0.36
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000047496 ENSMUST00000058688 0.204±0.03 0.544±0.28 0.271±0.00 1.852±0.56 0.321±0.11 1.531±0.74 0.281±0.09 2.509±0.93 0.917±0.58 0.376±0.11 0.136±0.00 1.274±0.77 0.056±0.00 N/A
ENSMUST00000172299 0.353±0.09 0.250±0.00 0.655±0.16 1.823±0.71 0.224±0.18 0.733±0.24 0.148±0.03 0.858±0.20 0.503±0.35 0.285±0.06 0.101±0.04 1.037±0.44 0.046±0.02 0.140±0.08
ENSMUSG00000050840 ENSMUST00000062528 0.010±0.00 0.098±0.05 0.029±0.02 2.215±0.82 N/A 0.189±0.10 1.059±0.08 0.062±0.02 0.006±0.00 0.063±0.02 0.027±0.00 0.186±0.14 0.011±0.00 0.170±0.12
ENSMUSG00000097482 ENSMUST00000181383 0.263±0.04 0.442±0.17 N/A N/A 0.399±0.07 1.916±0.62 N/A N/A 1.056±0.04 0.176±0.03 N/A 2.114±1.15 N/A 0.128±0.00
ENSMUST00000186958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.251±0.00
ENSMUSG00000099582 ENSMUST00000191422 0.555±0.00 N/A N/A 0.170±0.01 0.305±0.00 0.726±0.00 N/A N/A 0.196±0.15 0.336±0.00 N/A N/A N/A N/A
ENSMUSG00000099669 ENSMUST00000187882 N/A N/A N/A N/A N/A N/A N/A 0.313±0.16 0.134±0.09 N/A N/A 0.097±0.00 N/A 0.285±0.00

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