C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ARP3 actin-related protein 3 homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263238 ACTR3-001 ENSG00000115091 9606 + 2:113889960-113962596 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263238
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263238 9.293±0.00 11.196±0.00 2.201±0.00 6.555±0.07 6.635±0.78 8.559±0.67 1.808±0.31 3.370±0.15 4.469±3.69 6.793±2.47 1.809±1.25 9.050±3.74 4.832±2.48 7.304±1.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WV CIL_0002WV_0002 CGP 2:113889960-115845752

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0002102 IEA podosome
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005884 IEA actin filament
GO:0005885 IDA Arp2/3 protein complex
GO:0005911 IEA cell-cell junction
GO:0005925 IDA focal adhesion
GO:0006928 TAS cellular component movement
GO:0007163 IEA establishment or maintenance of cell polarity
GO:0008356 IEA asymmetric cell division
GO:0009743 IEA response to carbohydrate
GO:0010592 IEA positive regulation of lamellipodium assembly
GO:0015629 TAS actin cytoskeleton
GO:0016020 IDA membrane
GO:0016344 IEA meiotic chromosome movement towards spindle pole
GO:0030027 IEA lamellipodium
GO:0030056 IEA hemidesmosome
GO:0030838 IEA positive regulation of actin filament polymerization
GO:0031252 IEA cell leading edge
GO:0033206 IEA meiotic cytokinesis
GO:0034314 IDA Arp2/3 complex-mediated actin nucleation
GO:0038096 TAS Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0043519 IEA regulation of myosin II filament organization
GO:0045087 TAS innate immune response
GO:0045666 IEA positive regulation of neuron differentiation
GO:0046677 IEA response to antibiotic
GO:0050775 IEA positive regulation of dendrite morphogenesis
GO:0051015 IDA actin filament binding
GO:0051321 IEA meiotic cell cycle
GO:0051491 IEA positive regulation of filopodium assembly
GO:0051653 IEA spindle localization
GO:0060076 IEA excitatory synapse
GO:0060271 IMP cilium morphogenesis
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027579 Actr3-201 protein_coding Mus_musculus 0 2857
ENSMUST00000178474 Actr3-001 protein_coding Mus_musculus 0 2857
ENSMUST00000118948 Gm8822-001 processed_pseudogene Mus_musculus 0 2745
ENSMUST00000191578 Actr3-011 nonsense_mediated_decay Mus_musculus 0 1620
ENSMUST00000188497 Actr3-002 protein_coding Mus_musculus 0 1046
ENSMUST00000186008 Actr3-006 retained_intron Mus_musculus 0 992
ENSMUST00000191544 Actr3-004 protein_coding Mus_musculus 0 889
ENSMUST00000187460 Actr3-003 protein_coding Mus_musculus 0 795
ENSMUST00000191004 Actr3-008 protein_coding Mus_musculus 0 680
ENSMUST00000189192 Actr3-009 retained_intron Mus_musculus 0 521
ENSMUST00000185280 Actr3-007 protein_coding Mus_musculus 0 418
ENSMUST00000128586 Gm15899-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000188827 Actr3-005 retained_intron Mus_musculus 0 368
ENSMUST00000188362 Actr3-010 retained_intron Mus_musculus 0 326

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