C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263275 OPA3-002 ENSG00000125741 9606 - 19:45546281-45584819 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000263275
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000263275 2.060±0.00 1.680±0.00 0.364±0.00 0.507±0.18 0.566±0.14 0.563±0.00 1.023±0.32 2.367±2.06 0.258±0.00 1.941±1.61 1.980±1.28 2.277±0.44 0.700±0.25

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0007601 IMP visual perception
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000063976 Opa3-001 protein_coding Mus_musculus 0 580
ENSMUST00000161711 Opa3-002 processed_transcript Mus_musculus 0 383
ENSMUST00000037912 Ssh2-001 protein_coding Mus_musculus 0.0000000004 73
ENSMUST00000124271 Acin1-019 retained_intron Mus_musculus 0.00000007 66
ENSMUST00000074912 2010012O05Rik-201 protein_coding Mus_musculus 0.000003 60
ENSMUST00000148884 Blzf1-004 retained_intron Mus_musculus 0.00001 58
ENSMUST00000157025 Ctr9-003 retained_intron Mus_musculus 0.0005 53
ENSMUST00000152019 Ctr9-002 retained_intron Mus_musculus 0.0005 53

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