C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 40 (U5)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105994 Snrnp40-001 ENSMUSG00000074088 10090 + 4:130360132-130390026 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105994
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105994 17.235±5.55 12.714±1.40 14.962±2.29 26.038±14.95 13.703±2.05 14.303±2.89 7.993±0.31 11.741±0.29 22.452±19.58 13.026±1.40 6.569±0.32 25.538±3.27 25.058±10.47 15.416±5.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002A6 CIL_0002A6_0002 CGP 4:130315383-130390026
CIL_0006D8 CIL_0006D8_0002 CGP 4:130360132-130574173

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263694 SNRNP40-001 protein_coding Homo_sapiens 0 1375
ENST00000373720 SNRNP40-002 protein_coding Homo_sapiens 0 420
ENST00000474025 SNRNP40-006 processed_transcript Homo_sapiens 0 545
ENST00000486941 SNRNP40-005 processed_transcript Homo_sapiens 0 204
ENST00000489853 SNRNP40-003 processed_transcript Homo_sapiens 0 763

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