C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nei endonuclease VIII-like 3 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264596 NEIL3-001 ENSG00000109674 9606 + 4:177309836-177362943 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000264596
Transcript ID Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000264596 0.195±0.19 0.298±0.27 0.013±0.00 0.019±0.00 0.075±0.00 0.078±0.04 0.245±0.09 1.007±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GU CIL_0000GU_0002 CGP 4:177309836-177442503

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000405 ISS bubble DNA binding
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0003676 IEA nucleic acid binding
GO:0003684 IEA damaged DNA binding
GO:0003690 ISS double-stranded DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0003906 IDA:IEA DNA-(apurinic or apyrimidinic site) lyase activity
GO:0005634 IDA nucleus
GO:0006281 IEA DNA repair
GO:0006284 ISS:IEA base-excision repair
GO:0006289 IEA nucleotide-excision repair
GO:0008270 IEA zinc ion binding
GO:0016799 IEA hydrolase activity, hydrolyzing N-glycosyl compounds
GO:0019104 ISS DNA N-glycosylase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047768 Neil3-001 protein_coding Mus_musculus 0 1448
ENSMUST00000130656 Neil3-006 retained_intron Mus_musculus 0 512
ENSMUST00000135443 Neil3-002 protein_coding Mus_musculus 4.00001e-40 171

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