C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type V, alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264828 COL5A3-001 ENSG00000080573 9606 - 19:9959561-10010471 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264828
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264828 8.220±0.00 2.963±0.00 0.243±0.00 0.822±0.00 29.122±0.00 2.393±1.79 2.161±0.00 0.433±0.37 0.639±0.30 2.120±1.66 0.623±0.48 2.567±1.95 16.815±3.98 2.928±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000784 CIL_000784_0001 CGP 19:9853718-10010471
CIL_00077H CIL_00077H_0002 CGP 19:9959561-10022279

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 NAS:IEA extracellular matrix structural constituent
GO:0005518 NAS collagen binding
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005588 NAS collagen type V trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007160 IEA cell-matrix adhesion
GO:0007411 TAS axon guidance
GO:0008201 IEA heparin binding
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030199 NAS collagen fibril organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IEA extracellular matrix
GO:0043394 IEA proteoglycan binding
GO:0043588 NAS skin development
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004201 Col5a3-001 protein_coding Mus_musculus 0 4292
ENSMUST00000145974 Col5a3-002 retained_intron Mus_musculus 0 2442

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