C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC24 family member B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265175 SEC24B-001 ENSG00000138802 9606 + 4:109433815-109540896 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyLiverLungOvaryPlacentaTestisENST00000265175
Transcript ID Adrenal Brain Breast Kidney Liver Lung Ovary Placenta Testis
ENST00000265175 1.600±0.00 1.836±0.38 1.253±0.34 5.557±0.00 1.379±0.36 2.432±1.59 3.601±1.51 1.437±0.44 1.962±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0005215 TAS transporter activity
GO:0005515 IPI protein binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005829 TAS cytosol
GO:0006886 IEA intracellular protein transport
GO:0006888 TAS:IEA ER to Golgi vesicle-mediated transport
GO:0008270 IEA zinc ion binding
GO:0012507 TAS ER to Golgi transport vesicle membrane
GO:0016020 TAS membrane
GO:0016192 TAS vesicle-mediated transport
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0030127 IEA COPII vesicle coat
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0048208 TAS COPII vesicle coating
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001079 Sec24b-001 protein_coding Mus_musculus 0 2802
ENSMUST00000165873 Sec24b-002 protein_coding Mus_musculus 0 1999
ENSMUST00000172324 Sec24b-007 retained_intron Mus_musculus 0 337
ENSMUST00000168675 Sec24b-003 protein_coding Mus_musculus 0 206
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00009 55

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